Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00093-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:7661135-7669362 - Strand: -


Fig. S5 for SmLINC00093-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
Smp_170800.1 0 -1.03 -10.36 -11.70 -1.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028990.3 SmLINC00093-IBu 0.92 8.29e-07 4.68e-05
Smp_031000.1 SmLINC00093-IBu 0.94 8.79e-08 9.90e-06
Smp_043670.2 SmLINC00093-IBu 0.94 6.36e-08 7.95e-06
Smp_096020.1 SmLINC00093-IBu 0.97 1.60e-09 6.89e-07
Smp_170800.1 SmLINC00093-IBu 0.91 1.26e-06 6.29e-05
Smp_182890.1 SmLINC00093-IBu 0.97 2.13e-09 8.30e-07
Smp_186130.1 SmLINC00093-IBu 0.91 1.23e-06 6.17e-05
Smp_192890.1 SmLINC00093-IBu 0.90 3.36e-06 1.00e-04
Smp_205860.1 SmLINC00093-IBu 0.98 1.44e-10 1.47e-07
Smp_206200.1 SmLINC00093-IBu 0.90 2.94e-06 1.00e-04