Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00085-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:7583994-7591734 - Strand: -


Fig. S5 for SmLINC00085-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00085-IBu 0 0.66 1.93 4.89 2.71
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC00085-IBu 0.93 4.75e-07 3.17e-05
Smp_014780.1 SmLINC00085-IBu 0.93 2.26e-07 1.89e-05
Smp_017610.1 SmLINC00085-IBu 0.97 2.07e-09 8.14e-07
Smp_045200.1 SmLINC00085-IBu 0.93 3.72e-07 2.67e-05
Smp_068270.1 SmLINC00085-IBu 0.94 1.86e-07 1.65e-05
Smp_082580.1 SmLINC00085-IBu 0.93 2.86e-07 2.23e-05
Smp_084270.1 SmLINC00085-IBu 0.95 3.74e-08 5.54e-06
Smp_105730.1 SmLINC00085-IBu 0.96 1.15e-08 2.51e-06
Smp_118560.1 SmLINC00085-IBu 0.96 1.37e-08 2.82e-06
Smp_125200.1 SmLINC00085-IBu 0.97 9.35e-10 4.88e-07
Smp_125210.1 SmLINC00085-IBu 0.95 2.95e-08 4.72e-06
Smp_128510.1 SmLINC00085-IBu 0.95 4.94e-08 6.70e-06
Smp_131840.1 SmLINC00085-IBu 0.96 1.32e-08 2.74e-06
Smp_134960.1 SmLINC00085-IBu 0.94 1.28e-07 1.28e-05
Smp_150980.2 SmLINC00085-IBu 0.91 1.89e-06 8.36e-05
Smp_154180.1 SmLINC00085-IBu 0.96 9.48e-09 2.20e-06
Smp_154190.1 SmLINC00085-IBu 0.97 2.26e-09 8.61e-07
Smp_160360.1 SmLINC00085-IBu 0.98 2.70e-11 5.13e-08
Smp_163940.1 SmLINC00085-IBu 0.91 1.21e-06 6.10e-05
Smp_164550.1 SmLINC00085-IBu 0.97 1.81e-09 7.46e-07
Smp_170280.1 SmLINC00085-IBu 0.92 7.63e-07 4.41e-05
Smp_172520.1 SmLINC00085-IBu 0.94 1.68e-07 1.54e-05
Smp_175020.1 SmLINC00085-IBu 0.96 1.24e-08 2.63e-06
Smp_194960.1 SmLINC00085-IBu 0.94 7.00e-08 8.48e-06
Smp_194970.1 SmLINC00085-IBu 0.94 6.74e-08 8.27e-06
Smp_194980.1 SmLINC00085-IBu 0.94 9.06e-08 1.01e-05
Smp_197400.1 SmLINC00085-IBu 0.97 3.12e-10 2.42e-07
Smp_200750.1 SmLINC00085-IBu 0.93 3.28e-07 2.45e-05