Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00060-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:5843091-5849773 - Strand: -


Fig. S5 for SmLINC00060-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
SmLINC00060-IBu 0 0.94 -0.34 -3.66 -3.57

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 SmLINC00060-IBu 0.98 3.53e-11 6.06e-08
Smp_193700.1 SmLINC00060-IBu 0.91 1.51e-06 7.15e-05
Smp_193990.1 SmLINC00060-IBu 0.90 4.15e-06 1.00e-04