Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00050-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:4608361-4610882 - Strand: -


Fig. S5 for SmLINC00050-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC00050-IBu 0 0.53 -1.98 -4.97 -3.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC00050-IBu 0.90 2.90e-06 1.00e-04
Smp_036270.4 SmLINC00050-IBu 0.92 6.31e-07 3.86e-05
Smp_111640.1 SmLINC00050-IBu 0.95 4.16e-08 5.96e-06
Smp_112090.1 SmLINC00050-IBu 0.92 5.76e-07 3.62e-05
Smp_125070.1 SmLINC00050-IBu 0.94 1.65e-07 1.52e-05
Smp_184710.1 SmLINC00050-IBu 0.94 8.71e-08 9.85e-06
Smp_185680.1 SmLINC00050-IBu 0.90 3.24e-06 1.00e-04
Smp_185830.1 SmLINC00050-IBu 0.92 9.32e-07 5.07e-05
Smp_204360.1 SmLINC00050-IBu 0.92 6.61e-07 3.99e-05