Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00044-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:3144426-3145481 - Strand: -


Fig. S5 for SmLINC00044-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00044-IBu 0 0.32 -0.24 0.16 8.57
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041540.1 SmLINC00044-IBu 0.96 4.61e-09 1.37e-06
Smp_070540.1 SmLINC00044-IBu 0.92 5.40e-07 3.46e-05
Smp_089270.1 SmLINC00044-IBu 0.97 2.51e-10 2.10e-07
Smp_105450.1 SmLINC00044-IBu 0.91 1.22e-06 6.14e-05
Smp_105450.2 SmLINC00044-IBu 0.92 9.58e-07 5.17e-05
Smp_126340.1 SmLINC00044-IBu 0.91 1.89e-06 8.36e-05
Smp_137460.1 SmLINC00044-IBu 0.96 4.36e-09 1.32e-06
Smp_138360.1 SmLINC00044-IBu 0.92 1.10e-06 5.71e-05
Smp_152150.1 SmLINC00044-IBu 0.99 8.08e-14 1.43e-09
Smp_164400.1 SmLINC00044-IBu 0.98 5.95e-11 8.40e-08
Smp_167830.1 SmLINC00044-IBu 0.97 4.39e-10 3.01e-07
Smp_170840.1 SmLINC00044-IBu 0.98 4.79e-12 1.75e-08
Smp_181070.1 SmLINC00044-IBu 0.90 3.38e-06 1.00e-04